HL_4U3M_215

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

4U3M|1|6|U|1362, 4U3M|1|6|U|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3M_215 not in the Motif Atlas

Homologous match to HL_4V88_216

Geometric discrepancy: 0.2025

The information below is about HL_4V88_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36540.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4U3M|1|6|C|1359
4U3M|1|6|A|1360
4U3M|1|6|U|1361
4U3M|1|6|U|1362
4U3M|1|6|U|1363
4U3M|1|6|G|1364

Current chains

Chain 6

18S rRNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c9

40S ribosomal protein S19-A

Chain s5

40S ribosomal protein S5