HL_4U3U_080

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

4U3U|1|2|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3U_080 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.0686

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4U3U|1|2|G|330
4U3U|1|2|A|331
4U3U|1|2|U|332
4U3U|1|2|A|333
4U3U|1|2|G|334
4U3U|1|2|U|335
4U3U|1|2|G|336
4U3U|1|2|G|337
4U3U|1|2|C|338

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain S8

40S ribosomal protein S8-A