HL_4U3U_216

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U3U_216 not in the Motif Atlas

Homologous match to HL_4V88_216

Geometric discrepancy: 0.1323

The information below is about HL_4V88_216

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36540.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4U3U|1|6|C|1359
4U3U|1|6|A|1360
4U3U|1|6|U|1361
4U3U|1|6|U|1362
4U3U|1|6|U|1363
4U3U|1|6|G|1364

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain c9

40S ribosomal protein S19-A

Chain s5

40S ribosomal protein S5