HL_4U4O_090

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4O_090 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.2104

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U4O|1|2|A|829
4U4O|1|2|U|830
4U4O|1|2|U|831
4U4O|1|2|U|832
4U4O|1|2|U|833
4U4O|1|2|G|834
4U4O|1|2|U|835
4U4O|1|2|U|836
4U4O|1|2|G|837
4U4O|1|2|G|838
4U4O|1|2|U|839
4U4O|1|2|U|840
4U4O|1|2|U|841
4U4O|1|2|C|842
4U4O|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A