HL_4U4U_134

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

4U4U|1|5|U|879, 4U4U|1|5|A|883, 4U4U|1|5|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4U_134 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.0481

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

4U4U|1|5|A|876
4U4U|1|5|C|877
4U4U|1|5|G|878
4U4U|1|5|U|879
4U4U|1|5|G|880
4U4U|1|5|C|881
4U4U|1|5|A|882
4U4U|1|5|A|883
4U4U|1|5|A|884
4U4U|1|5|U|885

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l3

60S ribosomal protein L3

Chain m7

60S ribosomal protein L17-A

Chain o7

60S ribosomal protein L37-A