HL_4U4U_248

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

4U4U|1|6|C|489, 4U4U|1|6|U|493, 4U4U|1|6|U|494, 4U4U|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4U_248 not in the Motif Atlas

Homologous match to HL_8P9A_234

Geometric discrepancy: 0.3155

The information below is about HL_8P9A_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64292.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4U4U|1|6|G|486
4U4U|1|6|G|487
4U4U|1|6|G|488
4U4U|1|6|C|489
4U4U|1|6|C|490
4U4U|1|6|C|491
4U4U|1|6|A|492
4U4U|1|6|U|493
4U4U|1|6|U|494
4U4U|1|6|C|495
4U4U|1|6|G|496
4U4U|1|6|G|497
4U4U|1|6|G|498
4U4U|1|6|U|499
4U4U|1|6|C|500
4U4U|1|6|U|501

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A