HL_8P9A_234

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

8P9A|1|sR|G|487, 8P9A|1|sR|C|489, 8P9A|1|sR|A|492, 8P9A|1|sR|U|493, 8P9A|1|sR|U|494, 8P9A|1|sR|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64292.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8P9A|1|sR|G|486
8P9A|1|sR|G|487
8P9A|1|sR|G|488
8P9A|1|sR|C|489
8P9A|1|sR|C|490
8P9A|1|sR|C|491
8P9A|1|sR|A|492
8P9A|1|sR|U|493
8P9A|1|sR|U|494
8P9A|1|sR|C|495
8P9A|1|sR|G|496
8P9A|1|sR|G|497
8P9A|1|sR|G|498
8P9A|1|sR|U|499
8P9A|1|sR|C|500
8P9A|1|sR|U|501

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A