HL_4U4Y_028

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

4U4Y|1|1|A|1263

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4Y_028 not in the Motif Atlas

Geometric match to HL_5J7L_162

Geometric discrepancy: 0.3441

The information below is about HL_5J7L_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04775.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4U4Y|1|1|G|1262
4U4Y|1|1|A|1263
4U4Y|1|1|G|1264
4U4Y|1|1|U|1265
4U4Y|1|1|G|1266
4U4Y|1|1|U|1267
4U4Y|1|1|G|1268
4U4Y|1|1|U|1269
4U4Y|1|1|A|1270
4U4Y|1|1|A|1271
4U4Y|1|1|C|1272
4U4Y|1|1|A|1273
4U4Y|1|1|A|1274
4U4Y|1|1|C|1275
4U4Y|1|1|U|1276
4U4Y|1|1|C|1277

Current chains

Chain 1

25S ribosomal RNA

Nearby chains