Motif HL_04775.1 Version HL_04775.1 of this group appears in releases 3.77 to 3.87
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 1-15 | 3-14 | 4-13 | 5-12 | 5-13 | 6-10 | 6-11 | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_162 | 5J7L | 0.8888 | 1 | DA | LSU rRNA | G | 1087 | A | 1089 | A | 1090 | G | 1091 | C | 1092 | G | 1093 | U | 1094 | A | 1095 | A | 1096 | U | 1097 | A | 1098 | G | 1099 | C | 1100 | U | 1101 | C | 1102 | cWW | ncWW | cWW | ncwW | tSH | ||
| 2 | HL_2QWY_003 | 2QWY | 0.0000 | 2 | C | SAM-II riboswitch | A | 24 | G | 25 | U | 26 | C | 27 | G | 28 | C | 29 | G | 30 | U | 31 | G | 32 | A | 33 | A | 35 | A | 36 | A | 37 | U | 38 | U | 40 | cWW | ncSs | ncSs | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAGCGUAAUAGCUC | 1 |
| AGUCGCGUGAUAAAUGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAAGCGUAAUAGCU | 1 |
| GUCGCGUGAUAAAUG | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.89 | Avg 0.44 | Max 0.89
Coloring options: