HL_4U4Y_140

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4Y_140 not in the Motif Atlas

Homologous match to HL_8C3A_028

Geometric discrepancy: 0.2204

The information below is about HL_8C3A_028

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4U4Y|1|5|U|1267
4U4Y|1|5|G|1268
4U4Y|1|5|U|1269
4U4Y|1|5|A|1270
4U4Y|1|5|A|1271
4U4Y|1|5|C|1272
4U4Y|1|5|A|1273
4U4Y|1|5|A|1274

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain m2

unknown protein chain m2