HL_4U4Y_203

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U4Y_203 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.1059

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U4Y|1|6|A|829
4U4Y|1|6|U|830
4U4Y|1|6|U|831
4U4Y|1|6|U|832
4U4Y|1|6|U|833
4U4Y|1|6|G|834
4U4Y|1|6|U|835
4U4Y|1|6|U|836
4U4Y|1|6|G|837
4U4Y|1|6|G|838
4U4Y|1|6|U|839
4U4Y|1|6|U|840
4U4Y|1|6|U|841
4U4Y|1|6|C|842
4U4Y|1|6|U|843

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A