HL_4U50_012

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCUCGGU

Length

8 nucleotides

Bulged bases

4U50|1|1|U|545, 4U50|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U50_012 not in the Motif Atlas

Geometric match to HL_5VOE_001

Geometric discrepancy: 0.327

The information below is about HL_5VOE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20535.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U50|1|1|G|542
4U50|1|1|C|543
4U50|1|1|C|544
4U50|1|1|U|545
4U50|1|1|C|546
4U50|1|1|G|547
4U50|1|1|G|548
4U50|1|1|U|549

Current chains

Chain 1

25S ribosomal RNA

Nearby chains