3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGCAGCAG
Length
8 nucleotides
Bulged bases
4U50|1|1|C|1846, 4U50|1|1|G|1848, 4U50|1|1|A|1850
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U50_041 not in the Motif Atlas
Homologous match to HL_5TBW_041
Geometric discrepancy: 0.0515
The information below is about HL_5TBW_041
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_56817.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
8

Unit IDs

4U50|1|1|C|1844
4U50|1|1|G|1845
4U50|1|1|C|1846
4U50|1|1|A|1847
4U50|1|1|G|1848
4U50|1|1|C|1849
4U50|1|1|A|1850
4U50|1|1|G|1851

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain L4
60S ribosomal protein L4-A
Chain M7
60S ribosomal protein L17-A
Chain O7
60S ribosomal protein L37-A
Chain O9
60S ribosomal protein L39

Coloring options:


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