HL_4U50_091

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U50_091 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.1975

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U50|1|2|A|829
4U50|1|2|U|830
4U50|1|2|U|831
4U50|1|2|U|832
4U50|1|2|U|833
4U50|1|2|G|834
4U50|1|2|U|835
4U50|1|2|U|836
4U50|1|2|G|837
4U50|1|2|G|838
4U50|1|2|U|839
4U50|1|2|U|840
4U50|1|2|U|841
4U50|1|2|C|842
4U50|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A