3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
AUUGAGAGCU
Length
10 nucleotides
Bulged bases
4U50|1|2|G|1243, 4U50|1|2|G|1245
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U50_099 not in the Motif Atlas
Homologous match to HL_4V88_213
Geometric discrepancy: 0.1397
The information below is about HL_4V88_213
Detailed Annotation
Anticodon loop related
Broad Annotation
Anticodon loop related
Motif group
HL_27115.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
22

Unit IDs

4U50|1|2|A|1238
4U50|1|2|U|1239
4U50|1|2|U|1240
4U50|1|2|G|1241
4U50|1|2|A|1242
4U50|1|2|G|1243
4U50|1|2|A|1244
4U50|1|2|G|1245
4U50|1|2|C|1246
4U50|1|2|U|1247

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain C5
40S ribosomal protein S15
Chain D9
40S ribosomal protein S29-A
Chain E1
Ubiquitin-40S ribosomal protein S31

Coloring options:


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