3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUUAAUUG
Length
8 nucleotides
Bulged bases
4U50|1|5|U|1081
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4U50_137 not in the Motif Atlas
Geometric match to HL_5TBW_024
Geometric discrepancy: 0.0787
The information below is about HL_5TBW_024
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_77436.2
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
23

Unit IDs

4U50|1|5|C|1076
4U50|1|5|U|1077
4U50|1|5|U|1078
4U50|1|5|A|1079
4U50|1|5|A|1080
4U50|1|5|U|1081
4U50|1|5|U|1082
4U50|1|5|G|1083

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l5
60S ribosomal protein L5
Chain n1
60S ribosomal protein L21-A
Chain n9
60S ribosomal protein L29

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0999 s