HL_4U50_193

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

4U50|1|6|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U50_193 not in the Motif Atlas

Homologous match to HL_4V88_193

Geometric discrepancy: 0.0862

The information below is about HL_4V88_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_82182.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

4U50|1|6|G|330
4U50|1|6|A|331
4U50|1|6|U|332
4U50|1|6|A|333
4U50|1|6|G|334
4U50|1|6|U|335
4U50|1|6|G|336
4U50|1|6|G|337
4U50|1|6|C|338

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s8

40S ribosomal protein S8-A