HL_4U51_247

3D structure

PDB id

4U51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Narciclasine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

4U51|1|6|C|489, 4U51|1|6|U|493, 4U51|1|6|U|494, 4U51|1|6|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U51_247 not in the Motif Atlas

Homologous match to HL_8P9A_234

Geometric discrepancy: 0.2955

The information below is about HL_8P9A_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64292.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4U51|1|6|G|486
4U51|1|6|G|487
4U51|1|6|G|488
4U51|1|6|C|489
4U51|1|6|C|490
4U51|1|6|C|491
4U51|1|6|A|492
4U51|1|6|U|493
4U51|1|6|U|494
4U51|1|6|C|495
4U51|1|6|G|496
4U51|1|6|G|497
4U51|1|6|G|498
4U51|1|6|U|499
4U51|1|6|C|500
4U51|1|6|U|501

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A