HL_4U53_039

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CACCUUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U53_039 not in the Motif Atlas

Geometric match to HL_2Y9H_005

Geometric discrepancy: 0.386

The information below is about HL_2Y9H_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86870.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4U53|1|1|C|1759
4U53|1|1|A|1760
4U53|1|1|C|1761
4U53|1|1|C|1762
4U53|1|1|U|1763
4U53|1|1|U|1764
4U53|1|1|U|1765
4U53|1|1|G|1766

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain M9

60S ribosomal protein L19-A

Chain N2

60S ribosomal protein L22-A