HL_4U53_206

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAUUUUGUUGGUUUCUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U53_206 not in the Motif Atlas

Homologous match to HL_4V88_205

Geometric discrepancy: 0.4551

The information below is about HL_4V88_205

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_88364.1

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U53|1|6|U|828
4U53|1|6|A|829
4U53|1|6|U|830
4U53|1|6|U|831
4U53|1|6|U|832
4U53|1|6|U|833
4U53|1|6|G|834
4U53|1|6|U|835
4U53|1|6|U|836
4U53|1|6|G|837
4U53|1|6|G|838
4U53|1|6|U|839
4U53|1|6|U|840
4U53|1|6|U|841
4U53|1|6|C|842
4U53|1|6|U|843
4U53|1|6|A|844

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A