HL_4U55_027

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

4U55|1|1|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U55_027 not in the Motif Atlas

Homologous match to HL_5TBW_027

Geometric discrepancy: 0.0873

The information below is about HL_5TBW_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4U55|1|1|C|1239
4U55|1|1|A|1240
4U55|1|1|U|1241
4U55|1|1|G|1242
4U55|1|1|G|1243
4U55|1|1|A|1244
4U55|1|1|A|1245
4U55|1|1|G|1246
4U55|1|1|U|1247
4U55|1|1|C|1248
4U55|1|1|G|1249

Current chains

Chain 1

25S ribosomal RNA

Nearby chains