HL_4U55_249

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

4U55|1|6|G|487, 4U55|1|6|C|489, 4U55|1|6|U|493, 4U55|1|6|U|494, 4U55|1|6|C|495, 4U55|1|6|G|496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U55_249 not in the Motif Atlas

Homologous match to HL_8P9A_234

Geometric discrepancy: 0.3023

The information below is about HL_8P9A_234

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64292.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4U55|1|6|G|486
4U55|1|6|G|487
4U55|1|6|G|488
4U55|1|6|C|489
4U55|1|6|C|490
4U55|1|6|C|491
4U55|1|6|A|492
4U55|1|6|U|493
4U55|1|6|U|494
4U55|1|6|C|495
4U55|1|6|G|496
4U55|1|6|G|497
4U55|1|6|G|498
4U55|1|6|U|499
4U55|1|6|C|500
4U55|1|6|U|501

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain s9

40S ribosomal protein S9-A