HL_4U56_207
3D structure
- PDB id
- 4U56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Blasticidin S bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- AUUUUGUUGGUUUCU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U56_207 not in the Motif Atlas
- Homologous match to HL_4V88_205
- Geometric discrepancy: 0.1103
- The information below is about HL_4V88_205
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_88364.1
- Basepair signature
- cWW-cWW-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4U56|1|6|A|829
4U56|1|6|U|830
4U56|1|6|U|831
4U56|1|6|U|832
4U56|1|6|U|833
4U56|1|6|G|834
4U56|1|6|U|835
4U56|1|6|U|836
4U56|1|6|G|837
4U56|1|6|G|838
4U56|1|6|U|839
4U56|1|6|U|840
4U56|1|6|U|841
4U56|1|6|C|842
4U56|1|6|U|843
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
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