HL_4U56_211

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U56_211 not in the Motif Atlas

Homologous match to HL_4V88_209

Geometric discrepancy: 0.1902

The information below is about HL_4V88_209

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07372.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4U56|1|6|U|1055
4U56|1|6|U|1056
4U56|1|6|U|1057
4U56|1|6|U|1058
4U56|1|6|U|1059
4U56|1|6|U|1060
4U56|1|6|A|1061
4U56|1|6|A|1062
4U56|1|6|U|1063
4U56|1|6|G|1064

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d7

40S ribosomal protein S27-A

Chain s1

40S ribosomal protein S1-A