HL_4U56_223

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

4U56|1|6|C|1700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U56_223 not in the Motif Atlas

Homologous match to HL_8P9A_224

Geometric discrepancy: 0.3012

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52616.1

Basepair signature

cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH

Number of instances in this motif group

1

Unit IDs

4U56|1|6|A|1691
4U56|1|6|G|1692
4U56|1|6|A|1693
4U56|1|6|A|1694
4U56|1|6|G|1695
4U56|1|6|G|1696
4U56|1|6|G|1697
4U56|1|6|G|1698
4U56|1|6|G|1699
4U56|1|6|C|1700
4U56|1|6|A|1701
4U56|1|6|A|1702
4U56|1|6|C|1703
4U56|1|6|U|1704
4U56|1|6|C|1705
4U56|1|6|C|1706
4U56|1|6|A|1707
4U56|1|6|U|1708
4U56|1|6|C|1709
4U56|1|6|U|1710

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain n4

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A