HL_8P9A_224

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

8P9A|1|sR|C|1700, 8P9A|1|sR|A|1701, 8P9A|1|sR|A|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89346.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8P9A|1|sR|A|1691
8P9A|1|sR|G|1692
8P9A|1|sR|A|1693
8P9A|1|sR|A|1694
8P9A|1|sR|G|1695
8P9A|1|sR|G|1696
8P9A|1|sR|G|1697
8P9A|1|sR|G|1698
8P9A|1|sR|G|1699
8P9A|1|sR|C|1700
8P9A|1|sR|A|1701
8P9A|1|sR|A|1702
8P9A|1|sR|C|1703
8P9A|1|sR|U|1704
8P9A|1|sR|C|1705
8P9A|1|sR|C|1706
8P9A|1|sR|A|1707
8P9A|1|sR|U|1708
8P9A|1|sR|C|1709
8P9A|1|sR|U|1710

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain s6

40S ribosomal protein S6-A