HL_4U56_248
3D structure
- PDB id
- 4U56 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Blasticidin S bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.45 Å
Loop
- Sequence
- GGGCCCAUUCGGGUCU
- Length
- 16 nucleotides
- Bulged bases
- 4U56|1|6|G|487, 4U56|1|6|C|489, 4U56|1|6|U|493, 4U56|1|6|U|494, 4U56|1|6|C|495
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4U56_248 not in the Motif Atlas
- Homologous match to HL_8P9A_234
- Geometric discrepancy: 0.2731
- The information below is about HL_8P9A_234
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89498.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
4U56|1|6|G|486
4U56|1|6|G|487
4U56|1|6|G|488
4U56|1|6|C|489
4U56|1|6|C|490
4U56|1|6|C|491
4U56|1|6|A|492
4U56|1|6|U|493
4U56|1|6|U|494
4U56|1|6|C|495
4U56|1|6|G|496
4U56|1|6|G|497
4U56|1|6|G|498
4U56|1|6|U|499
4U56|1|6|C|500
4U56|1|6|U|501
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain e0
- 40S ribosomal protein S30-A
- Chain s9
- 40S ribosomal protein S9-A
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