HL_4U67_065

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4U67|1|X|G|2731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4U67_065 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.1078

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

4U67|1|X|C|2725
4U67|1|X|U|2726
4U67|1|X|G|2727
4U67|1|X|A|2728
4U67|1|X|A|2729
4U67|1|X|A|2730
4U67|1|X|G|2731
4U67|1|X|C|2732
4U67|1|X|A|2733
4U67|1|X|U|2734
4U67|1|X|C|2735
4U67|1|X|U|2736
4U67|1|X|A|2737
4U67|1|X|A|2738
4U67|1|X|G|2739

Current chains

Chain X

23s RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13