HL_4UG0_022
3D structure
- PDB id
- 4UG0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- STRUCTURE OF THE HUMAN 80S RIBOSOME
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UG0_022 not in the Motif Atlas
- Homologous match to HL_8C3A_019
- Geometric discrepancy: 0.1844
- The information below is about HL_8C3A_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
4UG0|1|L5|G|1561
4UG0|1|L5|G|1562
4UG0|1|L5|A|1563
4UG0|1|L5|A|1564
4UG0|1|L5|A|1565
4UG0|1|L5|C|1566
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain Lp
- 60S RIBOSOMAL PROTEIN L37A
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SL
- 40S RIBOSOMAL PROTEIN S11
- Chain SN
- 40S RIBOSOMAL PROTEIN S13
Coloring options: