HL_4UG0_058

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

4UG0|1|L5|A|4214, 4UG0|1|L5|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_058 not in the Motif Atlas

Homologous match to HL_5TBW_055

Geometric discrepancy: 0.1492

The information below is about HL_5TBW_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

4UG0|1|L5|U|4210
4UG0|1|L5|C|4211
4UG0|1|L5|A|4212
4UG0|1|L5|A|4213
4UG0|1|L5|A|4214
4UG0|1|L5|C|4215
4UG0|1|L5|G|4216
4UG0|1|L5|G|4217
4UG0|1|L5|U|4218
4UG0|1|L5|A|4219
4UG0|1|L5|A|4220
4UG0|1|L5|C|4221
4UG0|1|L5|G|4222

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LI

60S RIBOSOMAL PROTEIN L10-LIKE

Chain LT

60S RIBOSOMAL PROTEIN L21

Chain Lb

60S RIBOSOMAL PROTEIN L29