HL_4UG0_059

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGACAGAAACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_059 not in the Motif Atlas

Geometric match to HL_5J7L_188

Geometric discrepancy: 0.2999

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4UG0|1|L5|G|4249
4UG0|1|L5|G|4250
4UG0|1|L5|A|4251
4UG0|1|L5|C|4252
4UG0|1|L5|A|4253
4UG0|1|L5|G|4254
4UG0|1|L5|A|4255
4UG0|1|L5|A|4256
4UG0|1|L5|A|4257
4UG0|1|L5|C|4258
4UG0|1|L5|C|4259

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LJ

60S RIBOSOMAL PROTEIN L11