HL_4UG0_068

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_068 not in the Motif Atlas

Geometric match to HL_5D5L_001

Geometric discrepancy: 0.2213

The information below is about HL_5D5L_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4UG0|1|L5|C|4603
4UG0|1|L5|G|4604
4UG0|1|L5|A|4605
4UG0|1|L5|G|4606
4UG0|1|L5|A|4607
4UG0|1|L5|G|4608

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S RIBOSOMAL PROTEIN L9

Chain Lm

UBIQUITIN-60S RIBOSOMAL PROTEIN L40