HL_4UG0_091

3D structure

PDB id

4UG0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

STRUCTURE OF THE HUMAN 80S RIBOSOME

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

4UG0|1|S2|A|500, 4UG0|1|S2|C|502, 4UG0|1|S2|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UG0_091 not in the Motif Atlas

Homologous match to HL_4V88_197

Geometric discrepancy: 0.3213

The information below is about HL_4V88_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4UG0|1|S2|C|498
4UG0|1|S2|G|499
4UG0|1|S2|A|500
4UG0|1|S2|C|501
4UG0|1|S2|C|502
4UG0|1|S2|C|503
4UG0|1|S2|G|504

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

40S RIBOSOMAL PROTEIN S4, X ISOFORM

Chain SY

40S RIBOSOMAL PROTEIN S24