HL_4UJC_001

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UAAGCAUA

Length

8 nucleotides

Bulged bases

4UJC|1|A2|A|39

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_001 not in the Motif Atlas

Homologous match to HL_5TBW_001

Geometric discrepancy: 0.3046

The information below is about HL_5TBW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

4UJC|1|A2|U|37
4UJC|1|A2|A|38
4UJC|1|A2|A|39
4UJC|1|A2|G|40
4UJC|1|A2|C|41
4UJC|1|A2|A|42
4UJC|1|A2|U|43
4UJC|1|A2|A|44

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BN

60S RIBOSOMAL PROTEIN L15

Chain Ba

60S RIBOSOMAL PROTEIN L27A

Chain Bo

60S RIBOSOMAL PROTEIN L36A