HL_4UJC_006

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGUGG

Length

5 nucleotides

Bulged bases

4UJC|1|A2|G|222

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_006 not in the Motif Atlas

Homologous match to HL_5TBW_006

Geometric discrepancy: 0.3653

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4UJC|1|A2|C|219
4UJC|1|A2|G|220
4UJC|1|A2|U|221
4UJC|1|A2|G|222
4UJC|1|A2|G|223

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain BY

60S RIBOSOMAL PROTEIN L26