HL_4UJC_023

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

4UJC|1|A2|C|1655, 4UJC|1|A2|A|1658

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_023 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.573

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4UJC|1|A2|C|1654
4UJC|1|A2|C|1655
4UJC|1|A2|U|1656
4UJC|1|A2|C|1657
4UJC|1|A2|A|1658
4UJC|1|A2|G|1659

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain Ba

60S RIBOSOMAL PROTEIN L27A

Chain Bb

60S RIBOSOMAL PROTEIN L29