HL_4UJC_031

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

4UJC|1|A2|A|2359, 4UJC|1|A2|C|2360

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_031 not in the Motif Atlas

Homologous match to HL_5TBW_031

Geometric discrepancy: 0.2074

The information below is about HL_5TBW_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4UJC|1|A2|A|2353
4UJC|1|A2|C|2354
4UJC|1|A2|G|2355
4UJC|1|A2|A|2356
4UJC|1|A2|G|2357
4UJC|1|A2|A|2358
4UJC|1|A2|A|2359
4UJC|1|A2|C|2360
4UJC|1|A2|U|2361

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BR

60S RIBOSOMAL PROTEIN L19

Chain Bd

60S RIBOSOMAL PROTEIN L31