HL_4UJC_039

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_039 not in the Motif Atlas

Homologous match to HL_8C3A_038

Geometric discrepancy: 0.5416

The information below is about HL_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75033.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

4UJC|1|A2|G|2641
4UJC|1|A2|U|2642
4UJC|1|A2|U|2643
4UJC|1|A2|C|2644
4UJC|1|A2|G|2645
4UJC|1|A2|C|2646
4UJC|1|A2|C|2647

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BR

60S RIBOSOMAL PROTEIN L19

Chain Bp

60S RIBOSOMAL PROTEIN L37A