HL_4UJC_044

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4UJC|1|A2|U|2851

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_044 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.1624

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

4UJC|1|A2|C|2849
4UJC|1|A2|U|2850
4UJC|1|A2|U|2851
4UJC|1|A2|C|2852
4UJC|1|A2|G|2853
4UJC|1|A2|G|2854

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain Bn

60S RIBOSOMAL PROTEIN L41

Chain Bp

60S RIBOSOMAL PROTEIN L37A

Chain C1

Small subunit ribosomal RNA; SSU rRNA