HL_4UJC_051

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

4UJC|1|A2|U|3771

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_051 not in the Motif Atlas

Homologous match to HL_5TBW_050

Geometric discrepancy: 0.2245

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4UJC|1|A2|U|3765
4UJC|1|A2|C|3766
4UJC|1|A2|U|3767
4UJC|1|A2|A|3768
4UJC|1|A2|A|3769
4UJC|1|A2|U|3770
4UJC|1|A2|U|3771
4UJC|1|A2|A|3772
4UJC|1|A2|G|3773

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain AB

EIF5B

Chain BV

60S RIBOSOMAL PROTEIN L23

Chain C1

Small subunit ribosomal RNA; SSU rRNA