HL_4UJC_061
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UUUGGGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 4UJC|1|A2|U|4314
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJC_061 not in the Motif Atlas
- Geometric match to HL_4V83_139
- Geometric discrepancy: 0.3169
- The information below is about HL_4V83_139
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53597.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 31
Unit IDs
4UJC|1|A2|U|4312
4UJC|1|A2|U|4313
4UJC|1|A2|U|4314
4UJC|1|A2|G|4315
4UJC|1|A2|G|4316
4UJC|1|A2|G|4317
4UJC|1|A2|U|4318
4UJC|1|A2|U|4319
4UJC|1|A2|U|4320
4UJC|1|A2|U|4321
4UJC|1|A2|A|4322
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain BL
- 60S RIBOSOMAL PROTEIN L13
- Chain Ba
- 60S RIBOSOMAL PROTEIN L27A
- Chain Bi
- 60S RIBOSOMAL PROTEIN L36
- Chain Bo
- 60S RIBOSOMAL PROTEIN L36A
Coloring options: