HL_4UJC_063
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- AAGCAGAAUU
- Length
- 10 nucleotides
- Bulged bases
- 4UJC|1|A2|G|4435
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJC_063 not in the Motif Atlas
- Homologous match to HL_9AXU_058
- Geometric discrepancy: 0.4474
- The information below is about HL_9AXU_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_34245.2
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4UJC|1|A2|A|4433
4UJC|1|A2|A|4434
4UJC|1|A2|G|4435
4UJC|1|A2|C|4436
4UJC|1|A2|A|4437
4UJC|1|A2|G|4438
4UJC|1|A2|A|4439
4UJC|1|A2|A|4440
4UJC|1|A2|U|4441
4UJC|1|A2|U|4442
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain BH
- 60S RIBOSOMAL PROTEIN L9
- Chain Bm
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
Coloring options: