HL_4UJC_072
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- CAGCUAGCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJC_072 not in the Motif Atlas
- Geometric match to HL_7A0S_001
- Geometric discrepancy: 0.3026
- The information below is about HL_7A0S_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4UJC|1|A3|C|47
4UJC|1|A3|A|48
4UJC|1|A3|G|49
4UJC|1|A3|C|50
4UJC|1|A3|U|51
4UJC|1|A3|A|52
4UJC|1|A3|G|53
4UJC|1|A3|C|54
4UJC|1|A3|U|55
4UJC|1|A3|G|56
Current chains
- Chain A3
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain BX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Bh
- 60S RIBOSOMAL PROTEIN UL29
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: