HL_4UJC_074

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACUU

Length

4 nucleotides

Bulged bases

4UJC|1|A3|U|110

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_074 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2478

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4UJC|1|A3|A|108
4UJC|1|A3|C|109
4UJC|1|A3|U|110
4UJC|1|A3|U|111

Current chains

Chain A3

5.8S RIBOSOMAL RNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain BX

60S RIBOSOMAL PROTEIN L23A

Chain Bj

60S RIBOSOMAL PROTEIN L37

Chain Bl

60S RIBOSOMAL PROTEIN L39