HL_4UJC_116

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GCGUUCAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_116 not in the Motif Atlas

Geometric match to HL_3RG5_006

Geometric discrepancy: 0.2741

The information below is about HL_3RG5_006

Detailed Annotation

tRNA anticodon loop

Broad Annotation

tRNA anticodon loop

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4UJC|1|C1|G|1459
4UJC|1|C1|C|1460
4UJC|1|C1|G|1461
4UJC|1|C1|U|1462
4UJC|1|C1|U|1463
4UJC|1|C1|C|1464
4UJC|1|C1|A|1465
4UJC|1|C1|G|1466
4UJC|1|C1|C|1467

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain AC

Internal ribosome entry site; IRES

Chain CR

40S RIBOSOMAL PROTEIN ES17

Chain Cg

40S RIBOSOMAL PROTEIN RACK1