HL_4UJC_122

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UCUGAUCG

Length

8 nucleotides

Bulged bases

4UJC|1|A2|C|207

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_122 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.1677

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

4UJC|1|A2|U|201
4UJC|1|A2|C|202
4UJC|1|A2|U|203
4UJC|1|A2|G|204
4UJC|1|A2|A|205
4UJC|1|A2|U|206
4UJC|1|A2|C|207
4UJC|1|A2|G|208

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain BY

60S RIBOSOMAL PROTEIN L26

Chain Be

60S RIBOSOMAL PROTEIN L32