HL_4UJC_138

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

4UJC|1|A2|G|2398, 4UJC|1|A2|U|2402

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_138 not in the Motif Atlas

Homologous match to HL_8P9A_144

Geometric discrepancy: 0.3297

The information below is about HL_8P9A_144

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4UJC|1|A2|A|2397
4UJC|1|A2|G|2398
4UJC|1|A2|C|2399
4UJC|1|A2|A|2400
4UJC|1|A2|G|2401
4UJC|1|A2|U|2402
4UJC|1|A2|U|2403

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BP

60S RIBOSOMAL PROTEIN L17

Chain BR

60S RIBOSOMAL PROTEIN L19

Chain Bl

60S RIBOSOMAL PROTEIN L39