HL_4UJC_142

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUCCCUCG

Length

8 nucleotides

Bulged bases

4UJC|1|A2|C|4978, 4UJC|1|A2|U|4981, 4UJC|1|A2|C|4982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJC_142 not in the Motif Atlas

Geometric match to HL_8P9A_179

Geometric discrepancy: 0.3339

The information below is about HL_8P9A_179

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

4UJC|1|A2|C|4976
4UJC|1|A2|U|4977
4UJC|1|A2|C|4978
4UJC|1|A2|C|4979
4UJC|1|A2|C|4980
4UJC|1|A2|U|4981
4UJC|1|A2|C|4982
4UJC|1|A2|G|4983

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BU

60S RIBOSOMAL PROTEIN L22

Chain CI

40S RIBOSOMAL PROTEIN ES8