HL_4UJC_146
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- AUUGAUAGCU
- Length
- 10 nucleotides
- Bulged bases
- 4UJC|1|C1|U|1300, 4UJC|1|C1|G|1302
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4UJC_146 not in the Motif Atlas
- Homologous match to HL_8CRE_217
- Geometric discrepancy: 0.2249
- The information below is about HL_8CRE_217
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_98423.3
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
4UJC|1|C1|A|1295
4UJC|1|C1|U|1296
4UJC|1|C1|U|1297
4UJC|1|C1|G|1298
4UJC|1|C1|A|1299
4UJC|1|C1|U|1300
4UJC|1|C1|A|1301
4UJC|1|C1|G|1302
4UJC|1|C1|C|1303
4UJC|1|C1|U|1304
Current chains
- Chain C1
- 18S RIBOSOMAL RNA
Nearby chains
- Chain CP
- 40S RIBOSOMAL PROTEIN US19
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
- Chain Cf
- 40S RIBOSOMAL PROTEIN ES31
Coloring options: