HL_4UJD_005

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UUCUGAUCGA

Length

10 nucleotides

Bulged bases

4UJD|1|A2|C|207

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4UJD_005 not in the Motif Atlas

Geometric match to HL_8P9A_222

Geometric discrepancy: 0.3316

The information below is about HL_8P9A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

4UJD|1|A2|U|200
4UJD|1|A2|U|201
4UJD|1|A2|C|202
4UJD|1|A2|U|203
4UJD|1|A2|G|204
4UJD|1|A2|A|205
4UJD|1|A2|U|206
4UJD|1|A2|C|207
4UJD|1|A2|G|208
4UJD|1|A2|A|209

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AY

60S RIBOSOMAL PROTEIN L26

Chain Ae

60S RIBOSOMAL PROTEIN L32